Enterobase-API
warwick · Data
API for EnteroBase (https://enterobase.warwick.ac.uk) EnteroBase is a user-friendly online resource, where users can upload their own sequencing data for de novo assembly by a stream-lined pipeline. The assemblies are used for calling MLST and wgMLST patterns, allowing users to compare their strains to publically available genotyping data from other EnteroBase users, GenBank and classical MLST databases. Click here to find how to get and use an API token: http://bit.ly/1TKlaOU
Authentication
Sample Requests
Top level information about EnteroBase databases
Hover any highlighted part to learn what it does
curl -X GET "https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0?name=test&prefix=example&description=test"
import requests
params = {
"name": "test",
"prefix": "example",
"description": "test"
}
response = requests.get(
"https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0",
params=params,
)
print(response.json())const url = new URL('https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0');
url.searchParams.set('name', 'test');
url.searchParams.set('prefix', 'example');
url.searchParams.set('description', 'test');
const response = await fetch(url);
const data = await response.json();
console.log(data);package main
import (
"fmt"
"io"
"net/http"
"net/url"
)
func main() {
baseURL, _ := url.Parse("https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0")
q := baseURL.Query()
q.Set("name", "test")
q.Set("prefix", "example")
q.Set("description", "test")
baseURL.RawQuery = q.Encode()
targetURL := baseURL.String()
req, _ := http.NewRequest("GET", targetURL, nil)
client := &http.Client{}
resp, _ := client.Do(req)
defer resp.Body.Close()
body, _ := io.ReadAll(resp.Body)
fmt.Println(string(body))
}require "net/http"
require "json"
uri = URI("https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0")
uri.query = URI.encode_www_form({
"name" => "test",
"prefix" => "example",
"description" => "test"
})
http = Net::HTTP.new(uri.host, uri.port)
http.use_ssl = uri.scheme == "https"
req = Net::HTTP::Get.new(uri)
res = http.request(req)
puts JSON.parse(res.body)<?php
$url = "https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0?" . http_build_query([
"name" => "test",
"prefix" => "example",
"description" => "test"
]);
$opts = ["http" => [
"method" => "GET",
]];
$ctx = stream_context_create($opts);
$res = file_get_contents($url, false, $ctx);
print_r(json_decode($res, true));Login endpoint, refresh your API token
Hover any highlighted part to learn what it does
curl -X GET "https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/login?password=example&username=testuser"
import requests
params = {
"password": "example",
"username": "testuser"
}
response = requests.get(
"https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/login",
params=params,
)
print(response.json())const url = new URL('https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/login');
url.searchParams.set('password', 'example');
url.searchParams.set('username', 'testuser');
const response = await fetch(url);
const data = await response.json();
console.log(data);package main
import (
"fmt"
"io"
"net/http"
"net/url"
)
func main() {
baseURL, _ := url.Parse("https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/login")
q := baseURL.Query()
q.Set("password", "example")
q.Set("username", "testuser")
baseURL.RawQuery = q.Encode()
targetURL := baseURL.String()
req, _ := http.NewRequest("GET", targetURL, nil)
client := &http.Client{}
resp, _ := client.Do(req)
defer resp.Body.Close()
body, _ := io.ReadAll(resp.Body)
fmt.Println(string(body))
}require "net/http"
require "json"
uri = URI("https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/login")
uri.query = URI.encode_www_form({
"password" => "example",
"username" => "testuser"
})
http = Net::HTTP.new(uri.host, uri.port)
http.use_ssl = uri.scheme == "https"
req = Net::HTTP::Get.new(uri)
res = http.request(req)
puts JSON.parse(res.body)<?php
$url = "https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/login?" . http_build_query([
"password" => "example",
"username" => "testuser"
]);
$opts = ["http" => [
"method" => "GET",
]];
$ctx = stream_context_create($opts);
$res = file_get_contents($url, false, $ctx);
print_r(json_decode($res, true));Generic endpoint for lookup list of barcodes
Hover any highlighted part to learn what it does
curl -X GET "https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/lookup?barcode=example"
import requests
params = {
"barcode": "example"
}
response = requests.get(
"https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/lookup",
params=params,
)
print(response.json())const url = new URL('https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/lookup');
url.searchParams.set('barcode', 'example');
const response = await fetch(url);
const data = await response.json();
console.log(data);package main
import (
"fmt"
"io"
"net/http"
"net/url"
)
func main() {
baseURL, _ := url.Parse("https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/lookup")
q := baseURL.Query()
q.Set("barcode", "example")
baseURL.RawQuery = q.Encode()
targetURL := baseURL.String()
req, _ := http.NewRequest("GET", targetURL, nil)
client := &http.Client{}
resp, _ := client.Do(req)
defer resp.Body.Close()
body, _ := io.ReadAll(resp.Body)
fmt.Println(string(body))
}require "net/http"
require "json"
uri = URI("https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/lookup")
uri.query = URI.encode_www_form({
"barcode" => "example"
})
http = Net::HTTP.new(uri.host, uri.port)
http.use_ssl = uri.scheme == "https"
req = Net::HTTP::Get.new(uri)
res = http.request(req)
puts JSON.parse(res.body)<?php
$url = "https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/api/v2.0/lookup?" . http_build_query([
"barcode" => "example"
]);
$opts = ["http" => [
"method" => "GET",
]];
$ctx = stream_context_create($opts);
$res = file_get_contents($url, false, $ctx);
print_r(json_decode($res, true));Postman Setup Guide
- See official documentation for authentication and setup.
What can you build with Enterobase-API?
Enterobase-API is a Data API. Developers commonly use data APIs for:
- enriching your app with third-party datasets
- building data pipelines and ETL workflows
- querying and searching large datasets
- powering research, analysis, and reporting tools
- syncing reference data into your own systems
No authentication required. This API is open — no signup or key needed. Ideal for quick prototypes and public-facing features. Enterobase-API is free to use, making it a low-risk choice to experiment with.
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